.. SNAF documentation master file, created by
   sphinx-quickstart on Tue Apr  5 12:25:51 2022.
   You can adapt this file completely to your liking, but it should at least
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Welcome to SNAF's documentation!
================================

Splicing Neo-Antigen Finder (``SNAF``) is an easy-to-use pipeline to predict ``MHC-bound neoantigens`` (T-antigen) and ``altered surface protein``
(B-antigen) produced by abnormal ``alternative splicing`` events from RNA-Seq data.

.. image:: ./_static/fig1.png
   :height: 275px
   :width: 550px
   :align: center
   :target: target


Content
==========
.. toctree::
   :maxdepth: 2

   installation
   tutorial
   development
   api
   troubleshooting
   change_log
   contact