Change Log

Version 0.6.0 (2022.07.11)

Adding New functionalities:

  1. report B and T antigen in a more readable format

  2. allow users to add all info to the frequency table at once

  3. add long_read mode for B antigen when inferring full-length isoform and update the B viewer codebase as well

Version 0.5.2 (2022.04.17)

Fixed multiple bugs:

  1. scratch folder cleaning issue and multiprocessing conflist issues resolved

  2. tumor_specificity issue resolved

  3. fix docstring displacement

  4. In test folder, contain a complete testing case.

Version 0.5.1 (2022.04.16)

Fixed two bugs:

  1. Weckzueg can not be version 2.1.1, force it to be 2.0.2

  2. expose add_coord_frequency_table to snaf namespace

Version 0.5.0 (2022.04.06)

Initial release

Prior to Version 0.5.0

I started this project since Feb 2020 during my second rotation in Dr. Nathan Salomonis Lab, The initial code base can be seen from the first GitHub repository listed below. The neoantigen has been used in a few manuscript and ongoing project, in which I rename it as AltNeo-BT, the codebase can be seen from the second GitHub repository.